mirDIP : microRNA Data Integration Portal

Human miRNA-gene interaction (adjacency) matrix

Search genes targeted by a group of microRNAs.

Micro RNAs

- You may enter a list of microRNA symbols (minimum 2, in the format hsa-miR-xxx, case sensitive) delimited by: spaces, tabs, commas or semicolons. Search terms are not case sensitive.

- Search results will be presented as a table where 'Y' indicates that a gene is targeted by a microRNA.
- 'Missed miRNAs' column (rightmost column) shows the number of microRNAs that are not targeting the gene.

- When you are searching 20+ microRNAs, it is preferable to download results (CSV or TAB format) instead of displaying them in the browser.
- Retrieval times for sets of 200+ microRNAs may exceed several minutes.

Example search:
- MicroRNA symbols: hsa-let-7a-2-3p,hsa-miR-17-3p,hsa-miR-130a-5p,hsa-miR-17-5p,hsa-let-7a-3p,hsa-mir-625-5p

Search Options
Score class

Minimum Score:  

Use this option to filter Score Class..

Display/Download Options:

All contents copyright: Jurisica Lab, Schroeder Arthritis Institute, Krembil Research Institute - the University Health Network, Toronto, Canada. Last modified May 3, 2023. (Version, Database version

All downloads and use of this database are subject to the following terms.

Permission to use, copy, and modify this database hereby granted to all academic and not-for-profit institutions without fee, provided that name of organization and author appear in all copies of the database. Under these conditions, the permission to modify and distribute or to make extended versions of the database is explicitly granted to non-profit organizations. All commercial entities willing to download or use the database must contact the authors. This database is provided "AS-IS" and with out any warranty of any kind. In no event shall Krembil Research Institute - the University Health Network or the authors be liable for any consequential damage of any kind, or any damages resulting from the use of this database.

- Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370. doi: 10.1093/nar/gkx1144. PubMed PMID: 29194489; PubMed Central PMCID: PMC5753284
- Shirdel EA, Xie W, Mak TW, Jurisica I, 2011 NAViGaTing the Micronome. Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs. PLoS ONE 6(2): e17429. doi:10.1371/journal.pone.0017429