MicroRNA -
target predictions
BCmicro
- Link: http://compgenomics.utsa.edu/gene/gene_1.php
- PMID: 23282032
Bi-Targeting (run 2021)
- Link: https://www.cs.bgu.ac.il/~vaksler/BiTargeting.htm
- PMID: 20465802
CoMeTa
- Link: http://cometa.tigem.it/index.php
- PMID: 22345618
Cupid (version 2015)
- Link: http://cupidtool.sourceforge.net/
- PMID: 25378249
DIANA
- Link: http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=microT_CDS/index
- PMID: 22285563
MBStar (version 2014)
- Link: http://www.isical.ac.in/~bioinfo_miu/MBStar30.htm
- PMID: 25614300
mirAncestar (version 2016)
- Link: http://cs.mcgill.ca/~blanchem/mirancestar/
- PMID: 27899600
miRanda
(run 2021)
- Link: http://www.microrna.org
- PMID: 15502875
miRbase (version 2014)
- Link: http://www.mirbase.org/
- PMID: 14681370
Mircode
- Link: http://www.mircode.org/index.php
- PMID: 22718787
mirCox (version 2013)
- Link: http://210.212.254.116/mircox/pages/index.php
- PMID: 24267917
miRDB (version 2019)
- Link: http://mirdb.org/
- PMID: 25378301
mirMAP (version
2013)
- Link: http://mirmap.ezlab.org/
- PMID: 23034802
miRNATIP
(version 2016)
- Link: http://tblab.pa.icar.cnr.it/public/miRNATIP/1.0/
- PMID: 28185545
MirSNP
- Link: http://bioinfo.bjmu.edu.cn/mirsnp/download/
- PMID: 23173617
mirTar (version 2014)
- Link: http://mirtar.mbc.nctu.edu.tw/human/
- PMID: 21791068
miRTar2GO (version 2016)
- Link: http://mirtar2go.org/downloadPage.html
- PMID: 27903911
Mirza-G (version 2015)
- Link: http://www.clipz.unibas.ch/index.php?r=tools/sub/mirza_g
- PMID: 25628353
MultiMiTar
(version 2014)
- Link: http://www.isical.ac.in/~bioinfo_miu/multimitar.htm
- PMID: 21949731
PACCMIT (version 2013)
- Link: http://lcpt.epfl.ch/MicroRNA_target_predictions
- PMID: 22915600
PITA (run 2021)
- Link: https://genie.weizmann.ac.il/pubs/mir07/
- PMID: 17893677
RNA22 (v2) (Ensembl 96 and miRBase 22)
- Link: https://cm.jefferson.edu/rna22/Interactive/
- Miranda,K.C., Huynh,T., Tay,Y.,
Ang,Y.S., Tam,W.L., Thomson,A.M., Lim,B. and Rigoutsos,I. (2006) A Pattern-Based Method for the
Identification of MicroRNA Binding Sites and Their Corresponding
Heteroduplexes. Cell, 126, 1203?1217.
RNAhybrid (run 2021)
- Link: https://bibiserv2.cebitec.uni-bielefeld.de/rnahybrid
- PMID: 15383676
TargetScan 7.2 (2018)
- Link: http://www.targetscan.org/cgi-bin/targetscan/data_download.vert71.cgi
- PMID: 14697198
Tissue microRNA and gene expression
Bongiovanni*
- mRNA Data: GSE126448
- PMID: 31473989
Francisco*
- miRNA data: GSE181922
- PMID: 35482409
Ge*
- miRNA and mRNA data: GSE121842
- PMID: 31169949
GeW*
- miRNA and mRNA data: GSE149084
GTEx
-
mRNA data: GTEx portal
- PMID: 35549429
Hua*
- miRNA data: GSE135055
- PMID: 31902369
IID
- mRNA data: IID website
- PMID: 34755877
Kim*
- mRNA data: GSE37765
- PMID: 23405175
Lorenzi
- miRNA and mRNA data: GSE138734
- PMID: 34140680
Lyu*
- miRNA and mRNA data: GSE137308
Mao*
- mRNA data: GSE138518
- PMID: 32759991
McCall
- miRNA data: Supplementary Table 5
- PMID: 28877962
Naccarati
- miRNA data: GSE128359
- PMID: 29423032
Panwar
-
miRNA data: Access via miRmine R-package http://bioconductor.org/packages/release/bioc/html/miRmine.html
- PMID: 28108447
Rahman
-
miRNA data: GSE134949
Schulze
- miRNA and mRNA data: GSE110719
- PMID:
29986767
TCGA
- miRNA and mRNA data: Firehose
website
- PMID: 29625045
Schulze
- miRNA data: GSE110719
- mRNA data: GSE110716
- PMID: 29986767
Varghese*
- miRNA data: GSE176288
- mRNA data: GSE176271
- PMID: 34557219
Vladimirova*
- miRNA and mRNA data: GSE138042
- PMID: 33748479
Novel
microRNAs
- Ali et al.
- PMID: 32738291
- Backes et al.
- PMID: 26635395
- Barros-Filho et al.
- PMID: 30842597
- De Rie et al.
- PMID: 28829439
-
Fehlmann et al.
- PMID: 28911107
- Friedländer et al.
- PMID: 24708865
- Londin et al.
- PMID: 25713380
- Lorenzi et al.
- PMID: 34140680
- Martinez et al.
- PMID: 31368811
- McCall et al.
- PMID: 28877962
- Minatel et al.
- PMID: 29587854
- Pewarchuk et al.
- PMID: 31739401
- Rock et al.
- PMID: 31828039
- Wake et al.
- PMID: 27716130