mirDIP : microRNA Data Integration Portal

Bidirectional Search.

Find overlapping interactions among selected microRNAs and genes, in Homo sapiens.

Gene Symbol  

Search :
- You must enter one or more HUGO Gene Symbols (case sensitive) AND one or more MicroRNAs (in the format hsa-miR-xxx, case sensitive), delimited by: spaces, tabs, commas or semicolons.

Confidence score :
Describes the relative strength of the prediction for a microRNA to gene pair for the source specified.

Results download :
- We support Chrome, Edge or Firefox browsers.

Example search :
- gene symbols :   AKAP17A,AKR1C2,APP,MARK4,PRKY,CPAMD9,NMD3
targeted by
- microRNA symbols :   hsa-miR-603,hsa-let-7a-3p,hsa-miR-625-5p,hsa-miR-7852-3p,hsa-miR-17-5p,hsa-mir-25-5p

Search Options

Confidence class

Minimum Confidence:  

Use this option to filter Confidence class..
Confidence class
Top 1% Very High
Top 5% High
Top 1/3 Medium
Bottom 2/3 Low
Source Filter
BCmicrObitargeting May 2021CoMeTaCupidDIANAMBStar
MirAncesTarmiranda May 2021mirbasemiRcodemirCoXmiRDB v6
mirmap May 2021MiRNATIPMirSNPInTargetMirTar2miRTar2GOmirzag
MultiMiTarPACCMITPITA May 2021RNA22rnahybrid May 2021TargetScan v7 2

Select the data sources from which you would like to draw target predictions.
Number of Sources

Use this option to select microRNA target predictions that are present in at least a given number of sources -- irrespective of what those sources are.

May take 2-3 minutes to complete. Please wait.

All contents copyright: Jurisica Lab, Schroeder Arthritis Institute, Krembil Research Institute - the University Health Network, Toronto, Canada. Last modified Jan 26, 2024. (Version, Database version

All downloads and use of this database are subject to the following terms.

Permission to use, copy, and modify this database hereby granted to all academic and not-for-profit institutions without fee, provided that name of organization and author appear in all copies of the database. Under these conditions, the permission to modify and distribute or to make extended versions of the database is explicitly granted to non-profit organizations. All commercial entities willing to download or use the database must contact the authors. This database is provided "AS-IS" and with out any warranty of any kind. In no event shall Krembil Research Institute - the University Health Network or the authors be liable for any consequential damage of any kind, or any damages resulting from the use of this database.

- Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370. doi: 10.1093/nar/gkx1144. PubMed PMID: 29194489; PubMed Central PMCID: PMC5753284
- Shirdel EA, Xie W, Mak TW, Jurisica I, 2011 NAViGaTing the Micronome. Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs. PLoS ONE 6(2): e17429. doi:10.1371/journal.pone.0017429