mirDIP : microRNA Data Integration Portal


Bidirectional Search.

Find overlapping interactions among selected microRNAs and genes, in Homo sapiens.



Search :
- You must enter one or more HUGO Gene Symbols (case sensitive) AND one or more MicroRNAs (in the format hsa-miR-xxx, case sensitive), delimited by: spaces, tabs, commas or semicolons.

Confidence score :
Describes the relative strength of the prediction for a microRNA to gene pair for the source specified.

Results download :
- Do not use IE to download search results. Use either Chrome or Firefox browser.

Example search :
- gene symbols :   AKAP17A,AKR1C2,APP,zZz3,MARK4,C17orf51,PRKY,C11orf85,ZZZ,Xx,yY,CPAMD9, FLJ23569,NMD3
targeted by
- microRNA symbols :   hsa-miR-603,hsa-let-7a-3p,hsa-miR-625-5p,hsa-miR-7852-3p,hsa-miR-17-5p, hsa-mir-25-5p,hsa-miR-4433-3p,hsa-mir-891a,hsa-mir-9,hsa-mir-9*,hsa-mir-1-5p,hsa-miR-0
Gene Symbol


  and  


Micro RNA
Search Options
Confidence class


Minimum Confidence:  

Use this option to filter Confidence class..
Confidence class
Top 1% Very High
Top 5% High
Top 1/3 Medium
Bottom 2/3 Low
Source Filter
bitargeting May 2021CupidMBStarMirAncesTarmiranda May 2021mirbase
mirCoXmiRDB v6mirmap May 2021MiRNATIPMirTar2miRTar2GO
mirzagMultiMiTarPACCMITPITA May 2021RNA22rnahybrid May 2021
TargetScan v7 2
 

Select the data sources from which you would like to draw target predictions.
Number of Sources

Use this option to select microRNA target predictions that are present in at least a given number of sources -- irrespective of what those sources are.




All contents copyright: Jurisica Lab, Krembil Research Institute - the University Health Network, Toronto, Canada. Last modified June 25, 2021. (Version 5.0.2.3, Database version 5.0.2.2)

All downloads and use of this database are subject to the following terms.

Permission to use, copy, and modify this database hereby granted to all academic and not-for-profit institutions without fee, provided that name of organization and author appear in all copies of the database. Under these conditions, the permission to modify and distribute or to make extended versions of the database is explicitly granted to non-profit organizations. All commercial entities willing to download or use the database must contact the authors. This database is provided "AS-IS" and with out any warranty of any kind. In no event shall Krembil Research Institute - the University Health Network or the authors be liable for any consequential damage of any kind, or any damages resulting from the use of this database.

Reference:
- Tokar T, Pastrello C, Rossos AEM, Abovsky M, Hauschild AC, Tsay M, Lu R, Jurisica I. mirDIP 4.1-integrative database of human microRNA target predictions. Nucleic Acids Res. 2018 Jan 4;46(D1):D360-D370. doi: 10.1093/nar/gkx1144. PubMed PMID: 29194489; PubMed Central PMCID: PMC5753284
- Shirdel EA, Xie W, Mak TW, Jurisica I, 2011 NAViGaTing the Micronome. Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs. PLoS ONE 6(2): e17429. doi:10.1371/journal.pone.0017429