(Each paper should be submitted by set of 2 file: Info.txt and Data.txt. If paper keeps 2 or more comparisons then a set of 2 files (Info.txt and Data.txt) per each comparison.)

Step 1. Generate Info.txt file

PMID:
Reference:		Use this order: Authors. Title. Journal entry.
Comparison:
Type:	Drug treatment effects Disease vs. Disease Disease vs. Norm Evaluative Prognosis Unclear
Diseased samples:	n.a.0123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250
Control samples:	n.a.0123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250
Age diseased:
Age control:
Grade diseased:
Joint:	n.a. Hip Knee Spine
Tissue:	n.a. Blood Bone Cartilage Disc Femoral condyles Lateral tibial plateaus Medial tibial plateaus Meniscus Proximal femur Serum Subchondral bone Synovial Synovial membrane Synovial tissue Synovial fluid
Method:		(optional).
Data reference:		In text table number or supplementary table number or GEO set id with Web URL
Comment:		(optional but still desirable)
Throughput:	High Low
Molecule:	DNA Long non coding RNA MicroRNA Mitochondria mRNA Protein

  



Sample of prepared Info

Step 2. Make Data.txt file

• Use MS Office Excel or similar application to collect data (from paper / data-reference table) into 5 columns as tab delimited spreadsheet. Name columns as:
  
  - gene symbol (mandatory)
  
  - regulation (mandatory. Can be 'up' or 'down' only. Comment at Info.txt should clarify a way the regulation was set.)
  
  - score (optional. Set score of all 'up' as well as 'down' coming from Log(FC) as positive. Treat score of the other 'down' as negative values.)
  
  - p value (optional)
  
  - clone id (optional. Clone Id would be a Probe ID related to a Method or Platform.)
  
  

Sample of prepared Data

Step 3. Verify