OsteoDIP 
 
 
 
 
 
 



Submitting Paper (papers) to ADIP database

(Each paper should be submitted by set of 2 file: Info.txt and Data.txt. If paper keeps 2 or more comparisons then a set of 2 files (Info.txt and Data.txt) per each comparison.)



Step 1. Generate Info.txt file
PMID:
Reference:
Use this order: Authors. Title. Journal entry.
Comparison:
Type:
Diseased samples:
Control samples:
Age diseased:
Age control:
Grade diseased:
Joint:
Tissue:
Method:
(optional).
Data reference:
In text table number
or supplementary table number
or GEO set id with Web URL
Comment:
(optional but still desirable)
Throughput:
Molecule:

  



Sample of prepared Info

Paper Info




Step 2. Make Data.txt file
  • Use MS Office Excel or similar application to collect data (from paper / data-reference table) into 5 columns as tab delimited spreadsheet. Name columns as:

    - gene symbol (mandatory)

    - regulation (mandatory. Can be 'up' or 'down' only. Comment at Info.txt should clarify a way the regulation was set.)

    - score (optional. Set score of all 'up' as well as 'down' coming from Log(FC) as positive. Treat score of the other 'down' as negative values.)

    - p value (optional)

    - clone id (optional. Clone Id would be a Probe ID related to a Method or Platform.)


Sample of prepared Data

Data sample





Step 3. Verify


- If in doubt, please contact adip@cs.utoronto.ca with any question before submission.

- Submit Info.txt and Data.txt files to the ADIP database team (adip@cs.utoronto.ca; subject: add paper). Thank you for your contribution.



All contents copyright © Jurisica Lab, Schroeder Arthritis Institute, Krembil Research Institute - the University Health Network, Toronto, Canada.
Last modified September 1, 2023. Version 1.0.17.3. Database version 1.0.16.0