SHB Gene
protein-coding GIFtS : 54
GC09M037581
Src homology 2 domain containing adaptor protein B (Previous names: SHB adaptor protein (a Src homology 2 protein), SHB (Src homology 2 domain containing) adaptor protein B )Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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Aliases & Descriptions for SHB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases OTTHUMP00000021397 2 RP11-3J10.8 2 bA3J10.2 2
Descriptions SHB (Src homology 2 domain containing) adaptor protein B 1 , 2 SHB adaptor protein (a Src homology 2 protein) 1 , 2 Src homology 2 domain containing adaptor protein B 2
Search outside databases for aliases for SHB genePrevious GC identifers: GC09M038231 GC09M038089 GC09M037909
Summaries for SHB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: SHB_HUMAN, Q15464 Function : Adapter protein which regulates several signal transduction cascades by linking activatedreceptors to downstream signaling components. May play a role in angiogenesis by regulating FGFR1,VEGFR2 and PDGFR signaling. May also play a role in T-cell antigen receptor/TCR signaling,interleukin-2 signaling, apoptosis and neuronal cells differentiation by mediating basic-FGF andNGF-induced signaling cascades. May also regulate IRS1 and IRS2 signaling in insulin-producingcells
Gene Wiki entry for SHB
Genomic Location for SHB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SHB gene Entrez Gene cytogenetic band: 9p13.2-p13.1 Ensembl cytogenetic band: 9p13.1 HGNC chromosome: 9 SHB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M037581:
(about GC identifiers )
Start:
37,578,417 bp from pter
End:
38,059,249 bp from pter
Size:
480,833 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_008413.17 Proteins for SHB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SHB_HUMAN, Q15464 (See
protein sequence )Recommended Name: SH2 domain-containing adapter protein B Size : 509 amino acids; 55042 Da
Subunit : Interacts with PTPN11 (By similarity). Interacts with phosphorylated 'Tyr-720' of theligand-activated receptor PDGFRA via its SH2 domain. Interacts with the ligand-activated receptorsPDGFRB, FGFR1, KDR/VEGFR2, IL2RB and IL2RG. Interacts with EPS8 and V-SRC. Interacts with GRB2 andGRAP. Interacts with CD3Z. Interacts with tyrosine-phosphorylated LAT upon T-cell antigen receptoractivation. Interacts with PLCG1. Interacts with ZAP70, LCP2/SLP-76, VAV1 and GRAP2. Interactswith JAK1 and JAK3. Interacts with PTK2/FAK1. Interacts with CRK/CrKII. Interacts with IRS2
Subcellular location : Cytoplasm. Cell membrane; Peripheral membrane protein; Cytoplasmic side.Note=Associates with membrane lipid rafts upon TCR stimulation
Secondary accessions : Q504U5 Q5VUM8Alternative splicing : 2 isoforms : Q15464-1 Q15464-2
Post-translational modifications:
Phosphorylated upon PDGFRA, PDGFRB, TCR, IL2 receptor, FGRF1 or VEGFR2 activation1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_003019.2 ENSEMBL proteins: ENSP00000384411 ENSP00000366929 ENSP00000366936 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SHB: Assays for SHB:
Protein
Domains/ Families for SHB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15464 ProtoNet protein and cluster: Q15464
1 Blocks protein family : IPB000980 SH2 domain signature UniProtKB/Swiss-Prot: SHB_HUMAN, Q15464 Domain : The SH2 domain preferentially binds phosphopeptides with the consensus sequence Y-[TVI]-X-Land mediates interaction with PDGFRA, PDGFRB, FGRFR1, IL2RB, IL2RG, CD3Z and CRK/CrKII Similarity : Contains 1 SH2 domain
Gene Function for SHB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003028 Applied Biosystems Silencer ® siRNAs for SHB Sigma-Aldrich siRNA for SHB Sigma-Aldrich shRNA for SHB Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003028                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003028                                  untagged cDNA clones in CMV expression vector (see all 2 ): AK096227  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003028 UniProtKB/Swiss-Prot: SHB_HUMAN, Q15464 Function : Adapter protein which regulates several signal transduction cascades by linking activatedreceptors to downstream signaling components. May play a role in angiogenesis by regulating FGFR1,VEGFR2 and PDGFR signaling. May also play a role in T-cell antigen receptor/TCR signaling,interleukin-2 signaling, apoptosis and neuronal cells differentiation by mediating basic-FGF andNGF-induced signaling cascades. May also regulate IRS1 and IRS2 signaling in insulin-producingcells
Genatlas biochemistry entry for SHB :adaptor protein,ubiquitously expressed with SH2 domain (?signal transduction)
7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Shb) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for SHB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for SHB (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for SHB --5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for SHB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SHB 5 Novoseek chemical compound relationships for SHB gene
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Transcripts for SHB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
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OriGene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003028 Sigma-Aldrich siRNA for SHB Sigma-Aldrich shRNA for SHB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003028
REFSEQ mRNAs for SHB gene: NM_003028.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003028
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003028                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003028                                  untagged cDNA clones in CMV expression vector (see all 2 ): AK096227  
Additional cDNA sequence: AK055947.1 BC029953.1 BC136581.1 BC136582.1 X75342.1
9 DOTS entries : DT.75193214 DT.121192501 DT.121192683 DT.97784668 DT.100655154 DT.100746304 DT.100755540 DT.100755541 DT.121192533
20 AceView cDNA sequences :AW295062 BM967333 BQ958415 BG326702 BI962546 BE778005 AW302147 BV207870 CK821172 BM893981 BC029953 BE562483 BV184490 AI521954 BI789094 BQ439455 AI446569 BE042569 CD580276 BM545205
highest scoring ESTs for SHB :X75342 AA477174 AW025717 AW196917 AW241417 AW295062 BE385933 BE501067 BE501210 BE504742
Unigene Cluster for SHB: Src homology 2 domain containing adaptor protein B Hs.521482 [show with all ESTs ] Unigene Representative Sequence: NM_003028 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000401811
ENST00000377700
ENST00000377707
Expression for SHB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SHB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SHB 1 / 2 / 3
13 probe-sets matching SHB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.521482 Expression variation in blood from EXPOLDB for SHB
UniProtKB/Swiss-Prot: SHB_HUMAN, Q15464 Tissue specificity : Widely expressed
Orthologs for SHB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SHB gene from 4 species
About this table Species with no ortholog for SHB ENSEMBL Gene Tree for SHB Paralogs for SHB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SHB gene SHF 2 SHE 2 SHD 2
SNPs/Variants for SHB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SHB (up to first 250kb)
Disorders & Mutations for SHB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600314 Human Genome Epidemiology Navigator: SHB (1 document)
Medical News for SHB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SHB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/35 PubMed articles for SHB gene (see all 35
): The adaptor protein shb binds to tyrosine 1175 in vascular endothelial growth factor (VEGF) receptor-2 and regulates VEGF- dependent cellular migration. (PubMed id 15026417) 1, 3, 4 Holmqvist K.... Welsh M. (2004) The Src homology 2 domain protein Shb transmits basic fibroblast growth factor- and nerve growth factor-dependent differentiation signals in PC12 cells. (PubMed id 9751119) 1, 3, 4 Karlsson T.... Welsh M. (1998) Stimulation through the T cell receptor leads to interactions between SHB and several signaling proteins. (PubMed id 9484780) 1, 3, 4 Welsh M.... Shoelson S.E. (1998) IL-2 receptor signaling through the Shb adapter protein in T and NK cells. (PubMed id 12200137) 1, 3, 4 Lindholm C.K. (2002) Requirement of the Src homology 2 domain protein Shb for T cell receptor-dependent activation of the interleukin-2 gene nuclear factor for activation of T cells element in Jurkat T cells. (PubMed id 10488157) 1, 3, 4 Lindholm C.K.... Welsh M. (1999) Molecular interactions of the Src homology 2 domain protein Shb with phosphotyrosine residues, tyrosine kinase receptors and Src homology 3 domain proteins. (PubMed id 7537362) 1, 3, 4 Karlsson T.... Welsh M. (1995) The Shb adaptor protein binds to tyrosine 766 in the FGFR-1 and regulates the Ras/MEK/MAPK pathway via FRS2 phosphorylation in endothelial cells. (PubMed id 12181353) 1, 3, 4 Cross M.J....Claesson-Welsh L. (2002) NGF-dependent neurite outgrowth in PC12 cells overexpressing the Src homology 2-domain protein shb requires activation of the Rap1 pathway. (PubMed id 10964504) 1, 3, 4 Lu L.... Welsh M. (2000) Apoptosis of NIH3T3 cells overexpressing the Src homology 2 domain protein Shb. (PubMed id 8806685) 1, 3, 4 Karlsson T. and Welsh M. (1996) The SHB adaptor protein maps to human chromosome 9. (PubMed id 7713524) 1, 2, 3 Yulug I.G....Fisher E.M. (1994)
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Genome Databases showing SHB
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SHB
(According to HUGE )
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Specialized Databases showing SHB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SHB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for SHB:
Recombinant Proteins (SHB ) Antibodies (SHB )
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